I would put the pump ahead of the filter. They push better than they pull.
Aren't most fuel pumps after the main filters? I have Lehmans and the on-engine mechanical pump is after the primaries as are my Walbro pumps now.
You might consider some additional plumbing so that your polishing pump can act as a lift pump should the engine lift pump fail... just a thought
Is a stand alone fuel polishing system really needed?