Piers,
We have done a good bit of night boating the last several years across area lakes and coastal running to and from the islands we have along the Mississippi coast. For me it is about common sense things that you have probably read. If I am leaving on a trip and want to get an early start I minimize my exposure to light from the moment I get up. I usually have someone else making coffee, checking engine oil, etc. and then I take control as we leave from the flybridge. We have a rechargeable spotlight we keep up top for when we suspect something in the water. I close my eyes and the mate confirms/ denies what we think we see. We run from uptop except in cold weather. If someone needs something from inside, I never go. We always have myself and someone else concentrating on every water feature. I think staying focused- with no distractions - is crucial. We have strings of crab traps where we boat which need to be watched for.
Almost always- my first passage to somewhere new is not at night. I set my initial backtrack with running at night later in mind, staying well clear of navigational aids, pilings, etc.. After the initial backtrack I ALWAYS follow that track coming and going. Man do I catch grief over this one- but if it worked the first time- then keeping on that track will work every time. Rain, dark, tired, you name it. Obviously the nights leading up to a full moon and several afterwards are premium running time. The moon just comes up later and you can adjust your time to work around it.
Leaving before daylight and coming in after dark has allowed us many enjoyable boating hours we never would have had with our busy work schedule.